BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB013A10LP1|AL426456
(723 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig301 1366 0.0
>3x_Contig301
Length = 1492
Score = 1366 bits (688), Expect = 0.0
Identities = 716/723 (99%), Gaps = 4/723 (0%)
Strand = Plus / Minus
Query: 1 tcaatrgaatatcggtggtgcttaaaagtgaatacgagtaatgatgtttgtaatgtaaag 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1423 tcaatggaatatcggtggtgcttaaaagtgaatacgagtaatgatgtttgtaatgtaaag 1364
Query: 61 attaattagtatgtaaaatgctatgtaggtttattaagattaattttcctgatagataag 120
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 1363 attaattagtatgtaaaatgctatgtaggtttattaag-ttaattttcctgt--gataag 1307
Query: 121 gtatgttacaggaacagtatcatatgccaratcgacgactgtattcgttggaacttcatt 180
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1306 gtatgtt-caggaacagtatcatatgccagatcgacgactgtattcgttggaacttcatt 1248
Query: 181 ccaagattttttcttcacctgcctcattctattcagtagcattgtttccaggtttctttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1247 ccaagattttttcttcacctgcctcattctattcagtagcattgtttccaggtttctttt 1188
Query: 241 ctgtggaggacgtgactctgattccgatgctgtggacacagttttgctatccgtagcctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1187 ctgtggaggacgtgactctgattccgatgctgtggacacagttttgctatccgtagcctt 1128
Query: 301 tgtatggtctgttgtttttttttgatttagctcattcattactgactttgcagacgacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1127 tgtatggtctgttgtttttttttgatttagctcattcattactgactttgcagacgacaa 1068
Query: 361 gctttcatagaaatttacaacaatgtcatgcgcctttacttttgttcgatcgaagttgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 gctttcatagaaatttacaacaatgtcatgcgcctttacttttgttcgatcgaagttgag 1008
Query: 421 gacttgtagacctgttctagaaactgctcttgagagtgccacataagcttgacctttttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 gacttgtagacctgttctagaaactgctcttgagagtgccacataagcttgacctttttc 948
Query: 481 aaaaactctcttcaaatctactttaactttggaaagcgtttgaccttgtgacttatgaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 aaaaactctcttcaaatctactttaactttggaaagcgtttgaccttgtgacttatgaat 888
Query: 541 cgatagtgaccacgccaaaatcaatggtaattgagttcttgagaccaatggaacatcctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 cgatagtgaccacgccaaaatcaatggtaattgagttcttgagaccaatggaacatcctt 828
Query: 601 ttcatcctccatcgcccaagtctctggtcgaacgagaacaatcctggcgtcgccagaagg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 ttcatcctccatcgcccaagtctctggtcgaacgagaacaatcctggcgtcgccagaagg 768
Query: 661 agtgaagaattgaactaagggcaatttcgctcctcttgccttcttgtgtaaattccgtac 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 agtgaagaattgaactaagggcaatttcgctcctcttgccttcttgtgtaaattccgtac 708
Query: 721 aat 723
|||
Sbjct: 707 aat 705
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5716
Number of Sequences: 1807
Number of extensions: 5716
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 723
length of database: 10,358,551
effective HSP length: 16
effective length of query: 707
effective length of database: 10,329,639
effective search space: 7303054773
effective search space used: 7303054773
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.8 bits)